knitr::opts_knit$set(root.dir = rprojroot::find_rstudio_root_file())
knitr::opts_chunk$set(echo = F, warning = F, message = F)
## [1] "p009t1" "p009t2" "p013t" "p014t" "p009ot0" "p009ot2" "p013ot0"
## [8] "p013ot3" "p014ot0"
## [1] "broad done"
## [1] "morkel done"
## [1] "SMAD done"
## [1] "TNFa done"
## [1] "Wnt done"
## [1] "YAP done"
## [1] "regev done"
| rank | 0 | 1 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | TM4SF4 | RPS7 | PMEPA1 | NXPE1 | PRSS56 | PLA2G2A | MAP2 | AQP5 | AC136475.3 | HIST1H4C | CLCA4 | FABP1 | TM4SF4 | TESC | SPINK4 | CCL20 | MT-ND2 |
| 2 | RPS27 | RPS4X | CEACAM6 | B3GNT7 | ATAD5 | OLFM4 | MMP7 | XIST | AL137077.2 | TUBB | SELENOP | CKB | FABP1 | LDHB | MUC2 | AREG | MT-ND4 |
| 3 | RPS21 | C9orf16 | CD24 | PLA2G2A | IGF2BP1 | PIGR | COL6A1 | PGGHG | ARC | TUBA1B | GUCA2A | NDUFA4L2 | ANXA10 | TUBA1B | ZG16 | CXCL1 | MT-ATP6 |
| 4 | MT-ATP8 | RPS18 | ZBTB20 | PIGR | MCM4 | LEFTY1 | UPK2 | MUC6 | HIST1H2BG | H2AFZ | SLC26A3 | LDHA | CTSE | RPL7A | FCGBP | TM4SF4 | MT-CO3 |
| 5 | ROMO1 | RPS13 | FN1 | LEFTY1 | PMEPA1 | B3GNT7 | MAP1B | AC136475.3 | Z93241.1 | UBE2C | CEACAM7 | PGK1 | REG4 | RPL35 | ITLN1 | TM4SF1 | IGKC |
| 6 | RPL7A | IFITM3 | MUC4 | CENPJ | HSPA1A | C6orf15 | SLC28A3 | HEXIM1 | RANBP1 | CA1 | CSTB | ABCG2 | RPSA | TFF3 | KLK10 | ALPK3 | |
| 7 | RPS23 | DPEP1 | MT-ND1 | FN1 | NUPR1 | GPC1 | AC020656.1 | SOCS1 | HMGB1 | PLAC8 | MIR210HG | ADIRF | H2AFZ | CLCA1 | CXCL3 | MT-CO2 | |
| 8 | RPL10A | MACC1 | MT-CO3 | BRCA2 | AGR3 | LEMD1 | BST2 | JUN | PCNA | TSPAN1 | SCD | LGALS3 | RPL39L | SERPINA1 | KLK7 | MT-ND1 | |
| 9 | RPL10 | CEL | OLFM4 | IFITM3 | PRAC1 | KRT23 | CA9 | IER5L | HIST1H1B | CA2 | GAPDH | TFF1 | RAN | ST6GALNAC1 | ANXA2 | MT-ND3 | |
| 10 | RPS12 | SDC4 | MT-CO1 | XRCC2 | NXPE1 | TACSTD2 | ONECUT3 | RASD1 | UBE2T | PHGR1 | C4orf3 | MMP1 | NCL | REP15 | CXCL2 | MT-ND5 | |
| 11 | RPL30 | ATP9A | MT-ATP6 | ERAP2 | NXPE4 | PERP | LYZ | PPP1R15A | HMGB2 | GUCA2B | DBI | PHGR1 | ATP5MC3 | REG4 | REG4 | MT-CO1 | |
| 12 | RPS14 | PERP | MT-ND3 | DHFR | MT1M | UCA1 | TPM2 | HIST1H4A | TOP2A | PIGR | FAM162A | PSCA | SET | WFDC2 | PHLDA2 | COL27A1 | |
| 13 | RPS2 | IGKC | MT-CO2 | ALPK3 | MUC4 | S100A4 | HLA-DPA1 | FOSB | MCM3 | MUC12 | TPI1 | S100A6 | HSPD1 | KLK1 | S100A14 | MT-ND4L | |
| 14 | RPS15A | SLC2A12 | MT-ND4 | HELLS | SULT1B1 | TMEM47 | OLFM4 | AL031777.3 | GINS2 | AQP8 | RPL11 | S100P | NAP1L1 | GSN | GDF15 | PRSS56 | |
| 15 | RPLP1 | RPL13 | PRAC1 | BRCA1 | ADH1C | PI3 | CD74 | BTG2 | TPX2 | IFI27 | NDRG1 | ONECUT3 | EIF4EBP1 | SPINK1 | S100P | PMEPA1 | |
| 16 | RPL11 | RAB11FIP1 | MT-ND2 | NPTX2 | HMGCS2 | ANXA1 | HLA-DRA | EGR1 | MKI67 | CDHR5 | LCN15 | AC020656.1 | CLDN2 | HSPA1A | MALAT1 | FN1 | |
| 17 | RPL24 | PLS3 | NXPE4 | TOP2A | RPS4Y1 | S100A11 | BMP4 | EGR3 | DTYMK | CD177 | RPL7A | HPGD | IGFBP2 | MUC4 | TNFRSF12A | RNF213 | |
| 18 | RPL7 | KRT17 | MT-ND5 | LMNB1 | SI | SLC2A1 | CAPN12 | AL360012.1 | DNMT1 | MT-CO1 | IGFBP2 | HSD17B2 | LSM3 | KLF4 | HES1 | GAS6-AS1 | |
| 19 | RPL23 | JUP | IGKC | CENPF | SLC28A2 | TNFRSF12A | PKDCC | SOX4 | MCM7 | ITM2C | PKM | KLK7 | NDUFA8 | NUPR1 | TSPAN8 | HSPA1B | |
| 20 | RPL32 | ACTG1 | NUPR1 | HMGB1 | UGT2A3 | KRT80 | MUC5AC | CSKMT | MYBL2 | FXYD3 | RPS4X | TSPAN8 | PTMS | RASD1 | ARGLU1 | ||
| 21 | RPS3 | ACE2 | MUC12 | GAL | VSIG2 | IL18 | EPHB3 | AL355075.4 | GMNN | SGK1 | REN | KRT20 | LCN2 | SYTL2 | CENPJ | ||
| 22 | RPL5 | HSPA1B | DMBT1 | MKI67 | SEMA6A | PDLIM4 | REG1A | HIST1H2AH | TYMS | CEACAM1 | RPS14 | LGALS4 | RPL24 | IGKC | SOX4 | ||
| 23 | RPL13 | RPL34 | SI | ZIC2 | MT1E | PHLDA3 | DPP4 | IER5 | BRCA2 | MS4A12 | RPS7 | SLPI | RPL6 | FRYL | ENGASE | ||
| 24 | RPL35A | NPTX2 | MT-ND4L | CDC6 | CA2 | BASP1 | ADGRG6 | MAFB | TK1 | MT-ND3 | NACA | TFF2 | HSP90AB1 | SPDEF | MT-ATP8 | ||
| 25 | NACA | WNT11 | HSPA1A | MCM7 | SLC4A4 | TIMP2 | PIGR | RGS16 | MAD2L1 | MT-ATP6 | RPS18 | FXYD3 | RPL21 | KIAA1324 | MACC1 | ||
| 26 | RPS27A | PROX1 | SLC4A4 | CDT1 | CREB3L1 | C9orf16 | MUC17 | IER2 | CLSPN | MT-ND5 | RPL32 | AKR1C3 | CD81 | CREB3L1 | KCNQ1OT1 | ||
| 27 | RPL21 | NORAD | CA2 | MCM3 | SPINK1 | ATP6V1G1 | MUC5B | HIST1H2AG | CDK1 | DUOX2 | RPS27A | UQCRQ | RPS2 | MLPH | JUN | ||
| 28 | RPS6 | HSPH1 | PLCE1 | KIF4A | DMBT1 | CLIC3 | SYNE2 | PGGHG | HIST2H2AC | MT-ND1 | RPL10 | SH3BGRL3 | MRPL51 | HEPACAM2 | VEGFA | ||
| 29 | RPS16 | VEGFA | B3GALT5 | CIP2A | C15orf48 | ANXA3 | CXCL8 | HIST1H3A | ZWINT | PLA2G2A | ATP5MC3 | KLK11 | RPL8 | B3GNT6 | RNF43 | ||
| 30 | RPL12 | CDH1 | SULT1B1 | PTPRO | FAM3D | DCBLD2 | REG1B | JUNB | HELLS | CA4 | RPS19 | ANPEP | HMGB1 | PIGR | MTRNR2L12 | ||
| 31 | RPS20 | SRPX2 | VSIG2 | BIRC5 | TMEM176B | KLK6 | COL17A1 | HSPA1B | FAM111B | SDCBP2 | RPS13 | CEACAM6 | RPL27 | ENTPD8 | ATAD5 | ||
| 32 | RPL27 | RPL28 | PPP1R12B | GINS2 | BMP2 | KRT17 | REG3A | C2CD4B | CENPU | MT-ND2 | FDFT1 | MALAT1 | NACA | ATP2A3 | MKI67 | ||
| 33 | SSR4 | EIF4A2 | MT1E | ECT2 | RARRES1 | GGH | KLK10 | DNAJB1 | FBXO5 | MDK | RPS23 | PLA2G16 | SNRPB | ERN2 | ENC1 | ||
| 34 | LAMP1 | CREB5 | MT-ATP8 | MCM2 | GOLM1 | TMSB4X | TMC5 | BTG1 | HIST1H1D | C2orf88 | RPS16 | TXN | TUBB4B | ATOH1 | ANO9 | ||
| 35 | RPL6 | PTBP3 | HMGCS2 | CDCA7 | LGALS2 | UBE2E2 | SLCO4A1-AS1 | PPP1R10 | PTMA | PKIB | RPS3 | ALDH1A1 | LCN15 | RAB27A | IER5L | ||
| 36 | NDUFA4 | EPB41L1 | PCK1 | IGKC | PRKACB | BFSP1 | MT-ATP8 | VEGFA | MCM6 | GPA33 | S100A14 | MYL12B | RPL32 | TPSG1 | TRIM44 | ||
| 37 | PRDX1 | SOX9 | MT1M | CEL | MUC12 | PCCA | DMBT1 | RHOB | BIRC5 | AOC1 | RPL8 | ANXA2 | ATP5MC1 | VSIG2 | CENPF | ||
| 38 | RPL3 | CANX | SPINK1 | ONECUT2 | SPINK5 | LCN2 | MT-ND4L | MALAT1 | SNRNP25 | SAMD9 | RPL35A | S100A14 | RPLP0 | GALNT5 | SETX | ||
| 39 | RPL23A | EPSTI1 | MUC5B | NOTCH1 | MAOA | LINC00520 | AGR3 | ID4 | MCM4 | SMIM22 | RPS5 | KLK10 | YBX1 | PRAC1 | ATRX | ||
| 40 | ZFAS1 | ENC1 | TFCP2L1 | SET | TCEA3 | MSLN | SERPINA1 | TCIM | CDT1 | MT-CO2 | RPS2 | PHLDA2 | PRDX4 | NXPE1 | SPEN | ||
| 41 | RPL8 | DSP | FRYL | ATAD2 | RHBDL2 | MSX2 | IGFBP3 | FOS | RRM1 | MISP | RPL7 | S100A16 | RANBP1 | BCAS1 | HEXIM1 | ||
| 42 | RPL13A | TMEM176A | MTRNR2L12 | SMC4 | GLUL | BAMBI | HSPG2 | PLK2 | ATAD2 | TMPRSS2 | RPSA | SLC40A1 | MRPS26 | RAP1GAP | LUC7L3 | ||
| 43 | RPL39 | TFF3 | MT1G | NCAPD2 | PLA2G10 | KRT18 | SLC40A1 | IER3 | NASP | SLC4A4 | SLC25A5 | SLC22A18 | HSP90AA1 | L1TD1 | IER3 | ||
| 44 | RACK1 | MBNL2 | ATP2A3 | TK1 | ATP2A3 | ANXA2 | CEMIP2 | LINC02432 | RAN | CDKN2B-AS1 | RPL5 | MT-ATP8 | HSPE1 | DNAJC12 | ZFP36L2 | ||
| 45 | ASCL2 | KRT80 | FAM3D | WDR34 | TMEM176A | CHPF | KCNN4 | CD74 | RFC4 | MT-ND4L | RPL21 | CCND2 | RPS7 | ANO7 | DNAJB1 | ||
| 46 | RPL4 | YWHAZ | NFKBIZ | SPINK1 | HOXB13 | CNN3 | PLA2G16 | ARGLU1 | DUT | MT-CO3 | RPL24 | ETHE1 | RPL5 | PRUNE2 | VMP1 | ||
| 47 | RPSA | IRF2BP2 | AC254629.1 | MSH6 | KCTD12 | UBC | AGR2 | GADD45B | DEK | SLC9A3 | RPL18A | POLR2L | SNRPF | FMOD | |||
| 48 | RPS5 | LRP4 | ZFP36L2 | IPO5 | AMN | TUBA1A | MT-ND5 | CDKN1C | E2F1 | MT1M | RPS6 | CBR1 | RPS4X | NEURL1 | |||
| 49 | RPL29 | RPS15A | AMN | ORC6 | FOS | EIF1 | KLK6 | TRIM44 | CCNA2 | AMN | CD81 | RPL7 | FAM177B | ||||
| 50 | RPL18A | ANXA4 | AGR3 | PCNA | CTSS | CST3 | MSLN | HIST1H2BH | RFC2 | MT-ND4 | PYCARD | NPM1 | BEST2 | ||||
| 51 | RPL27A | SOX4 | ELF3 | FANCI | C10orf99 | FOLR1 | CCNL2 | JUND | LDHB | PDE9A | MIF | CCT7 | B4GALNT2 | ||||
| 52 | CD81 | GAS6-AS1 | PDCD4 | CCDC34 | CDC42EP5 | JUP | LAMB1 | XIST | MND1 | MXI1 | RPLP1 | MRPL41 | RETNLB | ||||
| 53 | RPS19 | CEACAM5 | CLMN | GOLIM4 | PPP1R12B | CD9 | CCND2 | HIST1H4E | DIAPH3 | VSIG2 | PRDX5 | PTTG1 | ALDH1L1 | ||||
| 54 | RPS9 | TMEM176B | FOS | RAD51AP1 | TFCP2L1 | TRIM29 | SLC12A2 | HES1 | FABP5 | ABCA5 | CLIC1 | ASCL2 | AQP3 | ||||
| 55 | LCN2 | FOXQ1 | AKAP9 | SMC1A | HLA-DRA | CCND1 | BACE2 | NRARP | ASF1B | SLC26A2 | RPL12 | RPS27A | CAPN9 | ||||
| 56 | TALDO1 | TOB1 | CA12 | HSPA1B | PGM2L1 | TMSB10 | NKTR | CEBPB | SMC4 | TMIGD1 | RPL6 | C1QBP | RAB26 | ||||
| 57 | RPS8 | ZFP36L1 | JCHAIN | HNRNPD | ITM2C | SAT1 | EGLN3 | TPM2 | SNRPG | CDKN2B | ENO1 | RPL11 | SCGB2A1 | ||||
| 58 | POMP | RPS3A | ERN2 | NAA50 | CA12 | KRT8 | ABHD2 | ZFP36L2 | TEX30 | PLA2G10 | PCCA | ODC1 | DLL1 | ||||
| 59 | RPL37 | RPL23A | IVNS1ABP | EPHB3 | PALLD | KRT19 | GCC2 | OLFM4 | RPA3 | CYP3A5 | RPS12 | HMGB3 | SMAD9 | ||||
| 60 | FTH1 | RPL10 | UGT2B17 | PAICS | NFKBIZ | ATP6V0E1 | SPNS2 | REG1A | SLBP | AC023157.3 | RPL3 | PTGES3 | PLXDC2 | ||||
| 61 | GSTP1 | TM4SF1 | HLA-DRA | KIF20B | CCL28 | RHOC | EEF2 | RPL28 | TOMM40 | DHRS9 | ACOT13 | RPLP2 | FAM3D | ||||
| 62 | EIF1 | TMEM123 | TCIM | HNRNPA3 | B3GALT5 | FLNA | PHLDA1 | GOLGA8A | HSPD1 | SMPDL3A | EIF1 | CNBP | FOXA3 | ||||
| 63 | RPS3A | RPL31 | GOLM1 | PBK | EDN3 | GSTP1 | APOL1 | CITED2 | CENPM | MEP1A | RACK1 | PSMB1 | SCNN1A | ||||
| 64 | EEF1B2 | FNDC3B | NKTR | RRM1 | MUC5B | SEMA3B | H1F0 | GADD45G | ANP32B | MXD1 | LGALS4 | TMSB10 | TCEA3 | ||||
| 65 | UQCRB | PTPRO | FOSB | ACE2 | KLF5 | MLF1 | ATP1B1 | PMAIP1 | CENPK | SCNN1B | EEF1B2 | SSBP1 | ANXA13 | ||||
| 66 | CST3 | HLA-C | JUNB | CHEK1 | PDCD4 | ATP6V1F | TRAF5 | GDF15 | SNRPD1 | USP53 | TMSB4X | RPS13 | TCIM | ||||
| 67 | RPLP2 | RPL21 | VMP1 | RPL35 | LRRC19 | LAMP1 | TBX3 | ELF3 | FANCI | TRPM6 | RPL27 | RPL23A | CDC42EP5 | ||||
| 68 | COL9A3 | ZFAS1 | GLUL | FOXM1 | METTL7A | S100A14 | DSG2 | MYADM | ACAT2 | SLC17A4 | EBP | EIF5A | MT-ND3 | ||||
| 69 | TPT1 | HLA-E | JUN | DEK | AGR2 | KRT6B | REG4 | RNF213 | NUCKS1 | C1QTNF12 | POMP | CCT2 | AKAP9 | ||||
| 70 | EEF1A1 | PTK7 | ZFP36 | DPEP1 | SELENOP | GUK1 | ITGA6 | CXCL8 | ORC6 | ACVRL1 | RPLP2 | PRKDC | MCF2L | ||||
| 71 | SLC25A6 | ARMCX3 | CDC42EP5 | PRKDC | FOSB | TMED9 | FAT1 | AC108134.2 | HNRNPAB | TMEM37 | RPL39 | GAPDH | FABP2 | ||||
| 72 | ATP5MC3 | TPT1 | SRGN | NOP56 | PLCE1 | GSN | TFF1 | ATF3 | NPM1 | DDX60 | COX7B | CKS2 | XBP1 | ||||
| 73 | EIF3H | RCN1 | SYNE2 | CLSPN | ST6GALNAC1 | COL9A3 | DUOX2 | AL118516.1 | NCAPG | HHLA2 | CD9 | PCCA | FOS | ||||
| 74 | MGST3 | RPS21 | MT1X | HMGA1 | PCK1 | VSNL1 | APP | CLDN4 | HSPE1 | RETREG1 | RPS9 | FABP5 | MT-ND2 | ||||
| 75 | FTL | SLC12A2 | BTG1 | BAG2 | SLC6A14 | DSP | CTSE | CCDC88B | CDC6 | XDH | INSIG1 | RPS20 | MT-ND1 | ||||
| 76 | YBX1 | SORBS1 | HEXIM1 | FBL | MT2A | REN | PDZK1IP1 | RPL13 | NCL | CCDC68 | COX7A2 | TUBB | MT1G | ||||
| 77 | PARK7 | IER3 | TSC22D3 | SLC12A2 | ELF3 | CADM1 | F3 | ZFP36 | PDCD5 | ENTPD8 | QPRT | POMP | HSPA2 | ||||
| 78 | CLIC1 | RPS12 | RMI2 | TC2N | KLK10 | LAMC2 | AC023157.3 | LSM2 | CDHR2 | VDAC1 | SLC25A5 | SIDT1 | |||||
| 79 | HINT1 | IFI27 | CDC20 | MT1F | SQSTM1 | NDRG1 | DUSP1 | BTG3 | RARRES3 | ACSL3 | PRMT1 | FOSB | |||||
| 80 | PERP | FOXO3 | BAZ1B | RNF186 | CSTB | ANXA1 | NKTR | CENPW | SULT1B1 | RPL10A | GTF3A | FAM107B | |||||
| 81 | PEBP1 | PLOD2 | SMC2 | KLF9 | RPL7A | CD55 | RPS19 | SMC2 | SLC51B | EPCAM | SSB | CRACR2A | |||||
| 82 | GUK1 | GNAS | CD24 | CHP2 | LAMB3 | SRGN | AHI1 | NUSAP1 | PDK4 | RPL23A | GSTP1 | MT-CO1 | |||||
| 83 | ATP5MC1 | TSPAN6 | HSPH1 | MT1H | S100A16 | VEGFA | MCL1 | UBE2S | TYMP | RPL13A | RPA3 | GNE | |||||
| 84 | PSMA7 | KCNQ1OT1 | NASP | LGALS4 | SERPINB1 | ERO1A | NR4A1 | HIST1H1E | LINC02023 | RPL30 | CENPW | AGR3 | |||||
| 85 | ATP6V1G1 | GPRC5A | LCN15 | CFTR | TXNIP | TFF2 | PAXBP1 | PGP | LRRC19 | RPLP0 | BEX3 | AC005833.1 | |||||
| 86 | ATP5F1E | RPL30 | PTPRD | TMEM59 | IFI6 | NEAT1 | EPHB3 | ANLN | EDN3 | TMSB10 | PARK7 | NXPE4 | |||||
| 87 | PSMB1 | HSPB1 | SLC29A1 | SRI | TM4SF1 | GDF15 | KCNQ1OT1 | SIVA1 | CCL28 | LGALS3 | MRPS34 | MIA3 | |||||
| 88 | PYCARD | ELF3 | RAD21 | DSG2 | CLIC1 | SLC6A8 | AKAP9 | SRSF7 | APOBR | HINT1 | BIRC5 | JUN | |||||
| 89 | SSBP1 | NUDT4 | HMGB2 | IFI16 | PDP1 | MUC13 | HNRNPU | YBX1 | MYLK | RPS15A | RPL10 | BTG2 | |||||
| 90 | GTF3A | RNF213 | MACC1 | SNORC | FTH1 | ATF4 | HJURP | CLDN8 | RPL29 | TPI1 | NEDD4L | ||||||
| 91 | PPDPF | RPL10A | ACTG1 | LIMA1 | NOXO1 | ANKRD36C | CENPH | SEMA6A | ACAT2 | PEBP1 | AGR2 | ||||||
| 92 | QPRT | NCOA7 | RIF1 | GALNT7 | CD81 | RPL13A | TUBB4B | C11orf86 | ZFAS1 | NDUFA4 | GALNT7 | ||||||
| 93 | SUB1 | EFNB2 | PCCA | DUOX2 | MRPL41 | HIST1H2AC | CCT6A | TMEM236 | HSD17B12 | DKC1 | MFSD4A | ||||||
| 94 | PDIA6 | ZBTB10 | PTK7 | PAPSS2 | NDFIP1 | RAB11FIP1 | SRSF3 | CASP5 | P4HA1 | SNRPG | SMIM14 | ||||||
| 95 | SLC25A5 | RPL37 | SRSF2 | B4GALNT3 | IDS | BRD2 | CACYBP | SECTM1 | RBCK1 | CBX5 | MUC5B | ||||||
| 96 | PRDX4 | TAPBP | PTBP3 | PDK4 | RHOV | MUC5B | RAD51AP1 | SCIN | RPS3A | COL9A3 | RPS4Y1 | ||||||
| 97 | SEC61B | LRRC75A | ASPM | SLC39A5 | TINAGL1 | RPS27 | TFDP1 | RSAD2 | RPS20 | LSM5 | HMGCS2 | ||||||
| 98 | NDUFB5 | LAMB3 | PTMA | CD24 | CDKN2A | KLF4 | PPM1G | LYPD8 | GGH | LSM4 | MT-ATP6 | ||||||
| 99 | RPL31 | ITGA2 | SAPCD2 | SQOR | KRT20 | REG3A | ALYREF | CCDC152 | PSMB1 | SIVA1 | ARFGEF3 | ||||||
| 100 | RPLP0 | RBM39 | HSPD1 | PTGER4 | TMBIM1 | HIST1H1E | EXOSC8 | B3GALT5 | ATP6V1G1 | MCM3 | MT-ND4 |